SNPViz Version 2.0
Please choose any data you want to compare README Use Version 1.0

Please select the version, region windows, clustering method and color scheme

Data version:
 Chromosome:
Range Type:
 SNP Option:
Show indel
Clustering Method: UPGMA Neighbour Joining
Color Scheme: Gray Scale MultiColor Scale

Coloring phenotype (optional)

Phenotype Color (template):
Accuracies Parameters:

Filtering by p-value (optional)

Filter SNPs by p-value range (example):
















You can only view this data in Wm82.a2.v1 version

You can only view this data in Wm82.a2.v1 version

You can only view this data in Wm82.a2.v1 version

You do not have permission to view this dataset, please contact the administrator.






You can only view this data in Wm82.a2.v1 version

You can only view this data in Wm82.a2.v1 version


If you use SNPViz in published work, please cite:

[1] Zeng S, Škrabišová M, Lyu Z, Chan YO, Dietz N, Bilyeu K, Joshi T: Application of SNPViz v2.0 using next-generation sequencing data sets in the discovery of potential causative mutations in candidate genes associated with phenotypes. International Journal of Data Mining and Bioinformatics 2021, 25(1-2):65-85.

[2] Zeng S, Škrabišová M, Lyu Z, Chan YO, Bilyeu K, Joshi T: SNPViz v2.0: A web-based tool for enhanced haplotype analysis using large scale resequencing datasets and discovery of phenotypes causative gene using allelic variations. In: 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM): 16-19 Dec. 2020; 2020: 1408-1415.

[3] Langewisch T, Zhang H, Vincent R, Joshi T, Xu D, Bilyeu K: Major soybean maturity gene haplotypes revealed by SNPViz analysis of 72 sequenced soybean genomes. PLoS One 2014, 9(4):e94150.

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