Xu X, Zeng L, Tao Y, Vuong T, Wan J, Boerma R, Noe J, Li Z, Finnerty S, Pathan SM, Shannon JG, Nguyen HT Pinpointing genes underlying the quantitative trait loci for root-knot nematode resistance in palaeopolyploid soybean by whole genome resequencing. Proc Natl Acad Sci U S A. 2013 Aug 13;110(33):13469-74. doi: 10.1073/pnas.1222368110. Epub 2013 Jul 29.
SNP
Data Conditions
Sample Name
Reference Genome
Literature
Paper Link
Link to Data
Williams vs Forrest (7947)
Refer Base Consensus Base
Wu X, Ren C, Joshi T, Vuong T, Xu D, Nguyen HT. SNP discovery by high-throughput sequencing in soybean. BMC Genomics. 2010 Aug 11;11:469.
Lam HM, Xu X, Liu X, Chen W, Yang G, Wong FL, Li MW, He W, Qin N, Wang B, Li J, Jian M, Wang J, Shao G, Wang J, Sun SS, Zhang G. Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection. Nat Genet. 2010 Dec;42(12):1053-9. Epub 2010 Nov 14.
G.Soja
Refer Base Consensus Base
Kim MY, Lee S, Van K, Kim TH, Jeong SC, Choi IY, Kim DS, Lee YS, Park D, Ma J, Kim WY, Kim BC, Park S, Lee KA, Kim DH, Kim KH, Shin JH, Jang YE, Kim KD, Liu WX, Chaisan T, Kang YJ, Lee YH, Kim KH, Moon JK, Schmutz J, Jackson SA, Bhak J, Lee SH. Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome.Proc Natl Acad Sci U S A. 2010 Dec 21;107(51):22032-7. Epub 2010 Dec 3.
Song Q, Hyten DL, Jia G, Quigley CV, Fickus EW, Nelson RL, et al. (2013) Development and Evaluation of SoySNP50K, a High-Density Genotyping Array for Soybean. PLoS ONE 8(1): e54985. https://doi.org/10.1371/journal.pone.0054985
Valliyodan, Babu & Nguyen, Henry. (2006). Valliyodan, B. & Nguyen, H. T. Understanding regulatory networks and engineering for enhanced drought tolerance in plants. Curr. Opin. Plant Biol. 9, 189-195. Current opinion in plant biology. 9. 189-95. 10.1016/j.pbi.2006.01.019.
USB-15x
USB-40x
Zhou302v1
Wm82.a1
Zhou, Z., Jiang, Y., Wang, Z. et al. Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. Nat Biotechnol 33, 408–414 (2015). https://doi.org/10.1038/nbt.3096
Zhou, Z., Jiang, Y., Wang, Z. et al. Resequencing 302 wild and cultivated accessions identifies genes related to domestication and improvement in soybean. Nat Biotechnol 33, 408–414 (2015). https://doi.org/10.1038/nbt.3096