SoyKB: Soybean Knowledge Base - SoyCSN (Soybean Context Specific Network) -

SoyCSN (Soybean Context Specific Network)

SoyCSN computes and visualizes any of the 14 soybean context specific networks both at the expression and interactome level. Users can compare the gene-gene relationship differences at different confidence levels across all the soybean tissues.

Tissue:

Gene:

Maximum Nodes Per Network:

Method:
Tissue specific transcription
C3D
Tissue specific interaction
ActPro NR ERW adaptive_ERW PenPro

Citation:
Juexin Wang, Md Shakhawat Hossain, Zhen Lyu, Jeremy Schmutz, Gary Stacey, Dong Xu, Trupti Joshi. SoyCSN: Soybean Context-Specific Network Analysis and Prediction Based on Tissue-Specific Transcriptome Data. 2019 Under Review.

Acknowledge:
Thanks for open source codes in computational tools C3D, ActPro, adaptive_ERW, PenRro, NR and ERW.